Publications

@article{zhang2024bottom,

title = {Bottom-up data integration in polymer models of chromatin organisation},

author = {Alex Chen Yi Zhang and Angelo Rosa and Guido Sanguinetti},

year  = {2024},

date = {2024-01-01},

journal = {Biophysical Journal},

volume = {123},

number = {2},

pages = {184–194},

publisher = {Cell Press},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{ubertini2024universal,

title = {Universal time and length scales of polar active polymer melts},

author = {Mattia Alberto Ubertini and Emanuele Locatelli and Angelo Rosa},

year  = {2024},

date = {2024-01-01},

journal = {ACS Macro Letters},

volume = {13},

number = {9},

pages = {1204–1210},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{arcangeli2024phase,

title = {Phase Behavior and Self-Assembly of Semiflexible Polymers in Poor-Solvent Solutions},

author = {Tobia Arcangeli and Tatjana S krbic and Somiealo Azote and Davide Marcato and Angelo Rosa and Jayanth R Banavar and Roberto Piazza and Amos Maritan and Achille Giacometti},

year  = {2024},

date = {2024-01-01},

journal = {Macromolecules},

volume = {57},

number = {18},

pages = {8940–8955},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{van2024amoeba,

title = {Amoeba Monte Carlo algorithms for random trees with controlled branching activity: Efficient trial move generation and universal dynamics},

author = {Pieter HW Hoek and Angelo Rosa and Ralf Everaers},

year  = {2024},

date = {2024-01-01},

journal = {Physical Review E},

volume = {110},

number = {4},

pages = {045312},

publisher = {American Physical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{marcato2024theory,

title = {Theory of polymers in binary solvent solutions: mean-field free energy and phase behavior},

author = {Davide Marcato and Achille Giacometti and Amos Maritan and Angelo Rosa},

url = {https://doi.org/10.1103/PhysRevMaterials.8.125601},

year  = {2024},

date = {2024-01-01},

journal = {Physical Review Materials},

volume = {8},

pages = {125601},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{zhang2024biosbm,

title = {bioSBM: a random graph model to integrate epigenomic data in chromatin structure prediction},

author = {Alex Chen Yi Zhang and Angelo Rosa and Guido Sanguinetti},

year  = {2024},

date = {2024-01-01},

journal = {arXiv preprint arXiv:2409.14425},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{ubertini2023topological,

title = {Topological Analysis and Recovery of Entanglements in Polymer Melts},

author = {Mattia Alberto Ubertini and Angelo Rosa},

year  = {2023},

date = {2023-01-01},

journal = {Macromolecules},

volume = {56},

number = {9},

pages = {3354–3362},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{ubertini2023spatial,

title = {Spatial Organization of Slit-Confined Melts of Ring Polymers with Nonconserved Topology: A Lattice Monte Carlo Study},

author = {Mattia Alberto Ubertini and Angelo Rosa},

year  = {2023},

date = {2023-01-01},

journal = {Macromolecules},

volume = {56},

number = {19},

pages = {7860–7869},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{marcato2023phase,

title = {Phase behaviour of semiflexible lattice polymers in poor-solvent solution: Mean-field theory and Monte Carlo simulations},

author = {Davide Marcato and Achille Giacometti and Amos Maritan and Angelo Rosa},

year  = {2023},

date = {2023-01-01},

journal = {The Journal of Chemical Physics},

volume = {159},

number = {15},

publisher = {AIP Publishing},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{chiarantoni2023linear,

title = {Linear catenanes in channel confinement},

author = {Pietro Chiarantoni and Cristian Micheletti},

year  = {2023},

date = {2023-01-01},

journal = {Macromolecules},

volume = {56},

number = {7},

pages = {2736–2746},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{dehaghani2023topological,

title = {Topological entanglement of linear catenanes: Knots and threadings},

author = {Zahra Ahmadian Dehaghani and Pietro Chiarantoni and Cristian Micheletti},

year  = {2023},

date = {2023-01-01},

journal = {ACS Macro Letters},

volume = {12},

number = {9},

pages = {1231–1236},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{slongo2023quantum,

title = {Quantum-inspired encoding enhances stochastic sampling of soft matter systems},

author = {Francesco Slongo and Philipp Hauke and Pietro Faccioli and Cristian Micheletti},

year  = {2023},

date = {2023-01-01},

journal = {Science Advances},

volume = {9},

number = {43},

pages = {eadi0204},

publisher = {American Association for the Advancement of Science},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{ubertini2022entanglement,

title = {Entanglement Length Scale Separates Threading from Branching of Unknotted and Non-concatenated Ring Polymers in Melts},

author = {Mattia Alberto Ubertini and Jan Smrek and Angelo Rosa},

year  = {2022},

date = {2022-01-01},

journal = {Macromolecules},

volume = {55},

number = {23},

pages = {10723–10736},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{chiarantoni2022effect,

title = {Effect of ring rigidity on the statics and dynamics of linear catenanes},

author = {Pietro Chiarantoni and Cristian Micheletti},

year  = {2022},

date = {2022-01-01},

journal = {Macromolecules},

volume = {55},

number = {11},

pages = {4523–4532},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{becchi2022density,

title = {Density-tunable pathway complexity in a minimalistic self-assembly model},

author = {Matteo Becchi and Riccardo Capelli and Claudio Perego and Giovanni M Pavan and Cristian Micheletti},

year  = {2022},

date = {2022-01-01},

journal = {Soft Matter},

volume = {18},

number = {42},

pages = {8106–8116},

publisher = {Royal Society of Chemistry},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{papale2021nanorheology,

title = {Nanorheology of active–passive polymer mixtures differentiates between linear and ring polymer topology},

author = {Andrea Papale and Jan Smrek and Angelo Rosa},

year  = {2021},

date = {2021-01-01},

journal = {Soft Matter},

volume = {17},

number = {30},

pages = {7111–7117},

publisher = {Royal Society of Chemistry},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{ubertini2021computer,

title = {Computer simulations of melts of ring polymers with nonconserved topology: A dynamic Monte Carlo lattice model},

author = {Mattia Alberto Ubertini and Angelo Rosa},

year  = {2021},

date = {2021-01-01},

journal = {Physical Review E},

volume = {104},

number = {5},

pages = {054503},

publisher = {American Physical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{becchi2021rna,

title = {RNA Pore Translocation with Static and Periodic Forces: Effect of Secondary and Tertiary Elements on Process Activation and Duration},

author = {Matteo Becchi and Pietro Chiarantoni and Antonio Suma and Cristian Micheletti},

year  = {2021},

date = {2021-01-01},

journal = {The Journal of Physical Chemistry B},

volume = {125},

number = {4},

pages = {1098–1106},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{franzini2021esshi,

title = {essHi-C: essential component analysis of Hi-C matrices},

author = {Stefano Franzini and Marco Di Stefano and Cristian Micheletti},

year  = {2021},

date = {2021-01-01},

journal = {Bioinformatics},

volume = {37},

number = {15},

pages = {2088–2094},

publisher = {Oxford University Press},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{amici2021topological,

title = {Topological friction and relaxation dynamics of spatially confined catenated polymers},

author = {Giulia Amici and Michele Caraglio and Enzo Orlandini and Cristian Micheletti},

year  = {2021},

date = {2021-01-01},

journal = {ACS macro letters},

volume = {11},

number = {1},

pages = {1–6},

publisher = {American Chemical Society},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}

@article{suma2020directional,

title = {Directional translocation resistance of Zika xrRNA},

author = {Antonio Suma and Lucia Coronel and Giovanni Bussi and Cristian Micheletti},

year  = {2020},

date = {2020-01-01},

journal = {Nature communications},

volume = {11},

number = {1},

pages = {3749},

publisher = {Nature Publishing Group UK London},

keywords = {Student Paper},

pubstate = {published},

tppubtype = {article}

}